R-code for performing analysis in paperCode document (.doc): contains word version (recommended for Mac users). Code document (.pdf): contains pdf version (recommended for PC users).
Download the following R function files, which contain several R functions needed for the analysis.collapseRows function: you should not need this if the latest version of WGCNA is installed collapseRows help file: you should not need this if the latest version of WGCNA is installed Network R Functions Other necessary functions for analysis
Microarray data in proper formatData sets (zipped): (LARGE: 391 MB). Unzip in your R working directory. Data files are explained in code document.
The weighted gene co-expression network analysis method is described in Theory Paper 1: Zhang and Horvath (2005)
For a more mathematical description of weighted gene co-expression networks, see: Dong and Horvath (2007, 2008)
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